QStrain: Phylogenetic tree
1) Load sample example :
Dengue
Influenza
Lassa
Mers
Nipah
Respiratory Syncytial Virus
Sars-Cov-2
Severe Fever with Thrombocytopenia Syndrome Virus
Sars-Cov-2 example (50 seqs)
PANGO lineage: B.1.1.7 [Alpha] (2,000 seqs)
PANGO lineage: B.1.351 [Beta] (1,327 seqs)
PANGO lineage: B.1.617.2 [Delta] (2,000 seqs)
PANGO lineage: P.1 [Gamma] (8,970 seqs)
PANGO lineage: B.1.1.529 [Omicron] (2,029 seqs)
PANGO lineage: KP.3 (859 seqs)
PANGO lineage: KP.2 (1,671 seqs)
PANGO lineage: LB.1 (761 seqs)
Collection Date: 2023.01.01 - 2024.01.31 (18,290 seqs)
Collection Date: 2024.02.01 - 2024.02.29 (9,706 seqs)
Collection Date: 2024.03.01 - 2024.03.31 (2,626 seqs)
Collection Date: 2024.04.01 - 2024.04.30 (1,028 seqs)
Dengue Type1 (1,974 seqs)
Dengue Type2 (1,651 seqs)
Dengue Type3 (980 seqs)
Dengue Type4 (247 seqs)
Dengue Type 1 + Type 2 + Type 3 + Type 4 (4,852 seqs)
Nipah (79 seqs)
Influenza H5N1 (1,130 seqs)
Influenza H7N9 (421 seqs)
Influenza H5N1 + H7N9 (1,551 seqs)
Lassa (82 seqs)
Severe Fever with Thrombocytopenia Syndrome Virus (3,329 seqs)
Respiratory Syncytial Virus A (3,164 seqs)
Respiratory Syncytial Virus B (2,616 seqs)
Respiratory Syncytial Virus A + B (5,780 seqs)
Mers (658 seqs)
2) Load your data :