QStrain MSA
1. Reference dataset
Selected virus:
Dengue
Influenza
Lassa
Mers
Nipah
Respiratory Syncytial Virus
Sars-Cov-2
Severe Fever with Thrombocytopenia Syndrome Virus
Variants of Concern:
Sars-Cov-2 example (50 seqs)
PANGO lineage: B.1.1.7 [Alpha] (2,000 seqs)
PANGO lineage: B.1.351 [Beta] (1,327 seqs)
PANGO lineage: B.1.617.2 [Delta] (2,000 seqs)
PANGO lineage: P.1 [Gamma] (8,970 seqs)
PANGO lineage: B.1.1.529 [Omicron] (2,029 seqs)
PANGO lineage: KP.3 (859 seqs)
PANGO lineage: KP.2 (1,671 seqs)
PANGO lineage: LB.1 (761 seqs)
Collection Date: 2023.01.01 - 2024.01.31 (18,290 seqs)
Collection Date: 2024.02.01 - 2024.02.29 (9,706 seqs)
Collection Date: 2024.03.01 - 2024.03.31 (2,626 seqs)
Collection Date: 2024.04.01 - 2024.04.30 (1,028 seqs)
Dengue Type 1 (1,974 seqs)
Dengue Type 2 (1,651 seqs)
Dengue Type 3 (980 seqs)
Dengue Type 4 (247 seqs)
Dengue Type 1 + Type 2 + Type 3 + Type 4 (4,852 seqs)
Nipah virus (79 seqs)
Influenza H5N1 (1,130 seqs)
Influenza H7N9 (421 seqs)
Influenza H5N1 + H7N9 (1,551 seqs)
Lassa (82 seqs)
Severe Fever with Thrombocytopenia Syndrome Virus (3,329 seqs)
Respiratory Syncytial Virus A (3,164 seqs)
Respiratory Syncytial Virus B (2,616 seqs)
Respiratory Syncytial Virus A + B (5,780 seqs)
Mers (658 seqs)
2. User dataset
You can input Fasta format only.
1) Load sample data:
Select an example
Collection Date: 2024.06.01 - 2024.06.30 (1 seqs)
Collection Date: 2024.06.01 - 2024.06.30 (2 seqs)
Collection Date: 2024.06.01 - 2024.06.30 (3 seqs)
Collection Date: 2024.06.01 - 2024.06.30 (4 seqs)
Collection Date: 2024.06.01 - 2024.06.30 (5 seqs)
Select an example
Dengue partial (1 seqs)
Dengue partial (2 seqs)
Dengue partial (3 seqs)
Dengue partial (4 seqs)
Dengue partial (5 seqs)
Select an example
Nipah partial (1 seqs)
Nipah partial (2 seqs)
Nipah partial (3 seqs)
Nipah partial (4 seqs)
Nipah partial (5 seqs)
2) Paste your sequence:
3) Load your file: